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exchange and sequence homogeneity, the former acting BglII fragments were extracted from agarose gels using Downloaded from http://mbe.oxfordjournals.org/ by guest on April 9, 2016
as a long-range homogenization force. Obviously, rates the Jetsorb kit (Genomed), ligated to the pUC19 plasmid
of exchange cannot be too low relative to mutation rate vector (BRL), and used to transform E. coli DH5␣ com-
to maintain the commonly observed high degree of in- petent cells (Gibco). Clones were screened using the -
traspecific sequence homogeneity (see Stephan 1997). galactosidase gene blue-white color system (Sambrook,
On the other hand, concerted evolution of ribosomal Fritsch, and Maniatis 1989), and recombinant ones were
DNA arrays in parthenogenetic lizards of the Heteron- identified through Southern blot hybridizations using a
otia binoei complex is consistent with biased gene con- mixture of pAAT/Ven1 and pGG/Not2 plasmids (Man-
version as the operative mechanism (Hillis et al. 1991). tovani et al. 1997) as probe. In particular, DNA was
transferred to nylon membranes (Boehringer Mannheim)
SatDNA studies have been successfully used as a according to the protocol of Southern (1975). Labeling
tool for taxonomic and phylogenetic investigations with- of probe DNA, filter hybridizations, and detection of the
in many invertebrate groups (Sainz and Cornudella hybridization signals were performed as described in the
1990; Badaracco et al. 1991; Bachmann and Sperlich manual for the nonradioactive DIG DNA labeling and
1993; Rovira, Beerman, and Edstrom 1993; La Volpe detection kit (Boehringer Mannheim). PAAT/Ven1 and
1994; Bachmann, Venanzetti, and Sbordoni 1996; Ugar- pGG/Not2 plasmid DNA was obtained using the Flex-
kovic, Podnar, and Plhol 1996). The molecular analyses iprep Kit (Pharmacia). Both strands of at least two
of Bacillus genomes showed the existence of a Bag320 clones from each population were sequenced by the di-
satDNA family in B. atticus and B. grandii and its ab- deoxy-chain termination method (Sanger, Nicklen, and
sence in B. rossius (Mantovani et al. 1993, 1997). Nu- Coulson 1977) using the Autoread sequencing kit and
cleotide sequences from B. atticus and B. grandii cluster the A.L.F. automatic sequencer (Pharmacia).
conspecifically in phylogenetic dendrograms. Moreover,
while the nucleotide sequences of the three B. grandii DNA Sequence Analysis
subspecies build up subspecific clusters, B. atticus
clones intermingle with no geographical trend. The ab- Nucleotide sequences were aligned using the clus-
sence of intrasubspecific higher sequence similarity of tal algorithm of the Sequence Navigator program (ver-
the Bag320 satDNA in B. atticus has been related to its sion 1.0.1, Applied Biosystems Inc.). Genetic distances
parthenogenetic reproduction and its automictic game- were calculated between all pairs of clones according to
togenesis (Mantovani et al. 1997). Kimura’s (1980) two-parameter method. Dendrograms
were constructed from the matrix of genetic distances
The present paper reports a detailed study of the using the neighbor-joining algorithm in the software
specific Bag320 family in the unisexual B. lynceorum to package MEGA (version 1.0) (Kumar, Tamura, and Nei
verify the contribution of both B. atticus and B. grandii 1993). The p-distance (Kumar, Tamura, and Nei 1993)
to its hybrid origin and, if it can be verified, to analyze was chosen as the basic estimate of the proportion of
sequence variation in an apomictic system. different nucleotide sites between each two sequences
and was analyzed with a Student’s t-test for independent
Materials and Methods samples. For appropriate comparisons, the following
Sampling clones of B. atticus and B. grandii were taken into ac-
count: pAAT/Ven1 (B. atticus atticus, Vendicari);
Individuals belonging to distinct populations of B. pAAT/Epi2–4 (B. atticus atticus, Epidavro); pACY/
lynceorum stick insects were collected during 1990– Epk1, 4, 12 (B. atticus cyprius, Episkopi); pACA/Igo2–
1994 from the following Sicilian locations (fig. 1): Cas- 4 (B. atticus carius, Igoumenitsa); pGG/Not2, 4, 10, 17,
sibile (1; Cas), Catania (2; Cat), Mascalucia (3; Mas), 20 (B. grandii grandii, Noto); pGB/Sco1, 2, 4, 7, 8, 10
Melilli (4; Mel), Noto (5; Not), Ponte Diddino (6; Pdd), (B. grandii benazzii, Scopello); pGB/Lev1, 4, 5 (B.
Ragusa (7; Rag), Siracusa (8; Sir), Vendicari (9; Ven), grandii benazzii, Levanzo Island); pGM/Mar9, 10, 12
Villasmundo (10; Vil), and Vittoria (11; Vit). (B. grandii maretimi, Marettimo Island) (Mantovani et
al. 1997; accession numbers U92526 and U79495–
Field-collected specimens were reared in the labo- U79520).
ratory in aerated cages on fresh food plants (bramble or
lentisk). Bodies were frozen and stored at Ϫ80ЊC until Results
they were used for molecular investigations.
Genomic DNA restriction analysis in the Cassibile
Cloning of Satellite DNA population showed a typical ladderlike pattern, with
some stain intensity differences, by AluI, BclI, BglII,
Genomic DNA was prepared from single animals, ClaI, MspI, and TaqI enzymes. Filter hybridization ex-
according to the method described by Preiss, Hartley, periments identified the ladders as pertaining to the
and Artavanis-Tsakonas (1988). Genomic DNA of B. Bag320 satellite family.
lynceorum from Cassibile was screened for restriction
analysis by endonuclease digestion and subsequent gel According to the restriction data, the approximately
electrophoresis. A ladderlike pattern of prominent bands 300-bp fragments obtained in BglII-restricted DNAs of
indicated the presence of a tandemly repeated satDNA. all B. lynceorum populations were regarded as mono-
The following restriction enzymes were applied: AluI, mers and cloned. Thirty-four clones were taken for fur-
BclI, BglII, ClaI, EcoRI, HaeIII, MspI, NdeI, PstI, SalI, ther analysis: pCas1–3, pCat4–5, pMas6–8, pMel9–12,
SmaI, and TaqI. The genomic DNAs of all other B. lyn-
ceorum populations were restricted only with BglII.