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                                          C. Brugnano et al. / Journal of Marine Systems 81 (2010) 312–322     315

































         Fig. 3. Vertical trends of temperature, salinity, fluorescence and dissolved oxygen. Data were grouped by depth range according to plankton data analysis. Layers are indicated by
         capital letters (see text for explanation).

         most stations (i.e. 1, 2, 5, 6 stations): in fact, average temperatures in  areas (101.0±25.4 and 16.8±12.5 ind.m −3 , in neritic and pelagic
         layer A were 22.59±0.4 °C (N=127) and 23.32±0.26 °C (N=111),  areas, respectively).
         respectively.                                           A total of 107 copepod species were identified in the investigated
            Moreover, the Depth of the Chlorophyll Maximum (DCM) was  area. The greatest number of species was found between 20–40 and
         observed at about 40 m in station 10 coinciding with the intruding  40–60 m layers (87 and 78, respectively), whereas the lowest (19) in
         MAW tongue, where the fluorescence maximum was recorded. In the  the 0–20 m one. Richness species (d) and species diversity (H′)
         western-most open sea stations (stations 10, 11, and 12) the DCM  indices showed similar spatial trends along the study area, with
         remains in layers A*/B, whereas on the Tyrrhenian side (stations 1 and  exception at 200–300 m depth, in which the former increased and the
         6), it deepens to 60–65 m (layer C), probably due to mixing and  latter decreased, with respect to the foregoing 150–200 m layer
         coastal influence. Dissolved oxygen showed a higher average value in  (Fig. 5). The lowest Shannon–Wiener index values (range: 2.4–2.9)
         layer B.                                              occurred in the upper layer, corresponding to the maximum of
            In the ordination plane of physical–chemical data set (Fig. 4), PCA  abundances, the highest ones (ranging between 3.2 and 3.3) between
         showed a clear separation of coastal, neritic and pelagic surface waters  40 and 80 m depth, due to neritic and intermediate pelagic copepod
         (in the upper part of the graph) from subsurface and deeper ones (in  species overlapping. The highest richness species was shown from
         the middle and lower part of the graph, respectively). PC1 and PC2  150 to 300 m layers (range: 17.9–51.6), in which occurred the lowest
         axes accounted for the greatest percentage (89.9%) of total variance.  copepod abundances, the lowest one occurred in the upper layers
         Salinity showed the highest coefficients in the linear combination  (range: 15.8–23.1). The horizontal trend of diversity, calculated on the
         with PC1 (0.613) and temperatures with PC2 (0.774). Fluorescence  integrated water column from 0 to 40 m depth, showed the highest
         (chlorophyll a) showed a negative correlation (−0.521) with the  values of indices in the neritic area among the islands (81 species;
         second axis. From BIO-ENV analysis resulted a high rank of correlation  d=22.0; H′=2.9), the lowest in coastal area (49 species; d=11;
         (Spearman's coefficient R=0.847, p≤1%) between biota and physico-  H′=2.5), whereas intermediate values (64 species; d=17.2; H′=2.8),
         chemical parameters. The best results were obtained relating copepod  in the pelagic one.
         species abundance data to temperature and salinity. However, high  Four groups of samples were determined by cluster analysis at 42%
         correlation ranks were obtained also for temperature, salinity and  similarity level (Fig. 6), each one identifying a different area and/or
         dissolved oxygen (0.76), Chl-a and temperature (0.74), and all  depth layer: I) surface water group in common between A and A*
         parameters together (0.69).                           samples of coastal, neritic and pelagic areas; II) more heterogeneous
                                                               subsurface water group, distributed preferentially along A*, B and C
                                                               samples, mainly, of neritic and pelagic areas; III) intermediate one
         3.2. Copepod assemblages                              from C–D to E samples, and IV) deeper water group (N200 m
                                                               samples). Therefore, A and A* (0–40 m) were considered as surface
            Copepods were the dominant group of zooplankton community,  layers, the layers B and C (40–80 m) as subsurface, the layers D and E
         representing on average the 75% of total zooplankton.  (80–200 m) as intermediate and the layers F and G (200–600 m) as
            Total mean abundances (adult and copepodite stages) decrease  deep layers in the study area.
         from 150.04ind.m −3  in the 0–20 m layer to 111.86 ind.m −3  in the  Four species accounted for 53% of similarity (SIMPER test) in
         60–80 m layer; a sharp decrease is clear below the later layer till  sample group I: Clausocalanus furcatus (15.1%), Acartia negligens
         200 m (5.00 ind.m −3 )(Fig. 5).                       (14.0%), Temora stylifera (12.7%) and Oithona plumifera (11.2%). In
            The same trend was shown by the mean abundances (adult and  group II, six species accounted for 40% of similarity: Nannocalanus
         copepodite stages) from inshore (262.0±8.2 ind.m −3 ) to offshore  minor (7.9%), Centropages typicus (7.2%), Clausocalanus jobei (6.9%),
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